Muzaffar Hussain may mean the following:
Fidai Khan Koka (real name Muzaffar Hussain), Mughal Governor of Lahore and Awadh Muzaffar Hussain Baig, former deputy chief minister of Indian state of Jammu and Kashmir Muzaffar Hussain Shah, Pakistani politician Mulla Muzaffar Hussain Kashani, Iranian philosopher and poet Muzaffer Hussain, Indian writer, journalist and columnist Muzaffar Husayn Mirza, Sultan of Herat